Hi there, i was wondering if someone could help with this. As there are several larger .bam files i wanted to slice out only data that belongs to say chromosome.
I found the following command on 1kGenomes site but it does not work.
samtools view -h ftp://ftp.1000genomes.ebi.ac.uk/vol1...e.20101123.bam 17:7512445-7513455
Can someone please help me the correct command syntax, i want to download .bam or .vcf files for full chromosomes such as 1,2 or 12 etc without specifying the genomic coordinates.
Thanks in advance.
Ashwin
I found the following command on 1kGenomes site but it does not work.
samtools view -h ftp://ftp.1000genomes.ebi.ac.uk/vol1...e.20101123.bam 17:7512445-7513455
Can someone please help me the correct command syntax, i want to download .bam or .vcf files for full chromosomes such as 1,2 or 12 etc without specifying the genomic coordinates.
Thanks in advance.
Ashwin
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