Hi all,
I am interested in the genome-wide DNA motifs for transcription factors.
I am wondering if there are softwares I can use to scan degenerate DNA motifs.
For example I want to search YTATAATRnnnWW in mouse genome in one shot. The problem is that Y stands for pyrimidine, R for purines and n for anyone of A,C,G,T and W for A or T. So I can't simply treat the sequences.
It would be great if someone has this kind of software.
Thanks.
I am interested in the genome-wide DNA motifs for transcription factors.
I am wondering if there are softwares I can use to scan degenerate DNA motifs.
For example I want to search YTATAATRnnnWW in mouse genome in one shot. The problem is that Y stands for pyrimidine, R for purines and n for anyone of A,C,G,T and W for A or T. So I can't simply treat the sequences.
It would be great if someone has this kind of software.
Thanks.