Hi,
I used samtools- bowtie2sam.pl to convert a bowtie file to a sam file. Later, I noticed that some of the alignments were missing in the sam file. Is this expected? Is there another bowtie to sam converter that does not reduce the data? Is it best to choose the sam option from bowtie?
Much Thanks,
Tirza Doniger
Bioinformatics Unit
Bar Ilan University
I used samtools- bowtie2sam.pl to convert a bowtie file to a sam file. Later, I noticed that some of the alignments were missing in the sam file. Is this expected? Is there another bowtie to sam converter that does not reduce the data? Is it best to choose the sam option from bowtie?
Much Thanks,
Tirza Doniger
Bioinformatics Unit
Bar Ilan University
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