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  • EBARDenovo - A new RNA-seq do novo assembler for paired-end Illumina data

    Hi,

    I wrote a program for de novo assembly of paired-end RNA-seq data.

    It's a 64-bits Windows command with .Net framework http://msdn.microsoft.com/en-us/library/w0x726c2.aspx.

    You can try it on a Windows-7 PC with 16G RAM for the assembly of single run Illumina transcriptomic data (20G, 90bp~100bp paired-end reads).

    EBARDenovo is designed for finding lower-expressed transcripts even their coverage depths are very low (even less than 2x).

    The download link:
    Download EBARDenovo for free. Highly-accurate de novo assembler of paired-end RNA-Seq. A highly-accurate search-based de novo assembler of paired-end RNA-Seq for advance transcriptomic study.


    I wish you can obtained fine results by my EBARDenovo program.

    Best regards,

    I am Hsueh-Ting Chu from Taiwan. [email protected]

  • #2
    Dear Hsueh-Ting Chu from Taiwan

    Good to know about your EBARDenovo. Does it support for transcriptome data generated from other platforms like ion torrent other than Illumina.

    Rocky

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    • #3
      Hi Hsueh-Ting Chu,

      Could you please give me some Idea on working with denovo bacterial transcriptome data to find the expression level.

      Regards,
      Manoharan

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