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11-22-2010, 08:53 AM
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Senior Member
Location: USA Join Date: Aug 2010
Posts: 103
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cuffdiff0.9.2: output problem when input multiple SAM files
Hi all,
I wonder if any of you have run cuffdiff to compare >=3 samples. I did this with cuffdiff 0.9.2, the latest version. The command is: ./cuffdiff -p 10 -o <output dir> [reference gtf] sample1.sam sample2.sam sample3. sam However, I did not get the *.diff files (i.e., 0_1*.diff) though I did get files such as gene_exp.diff, genes.fpkm_tracking etc. Did I miss something? Thank you all and happy thanks giving! :-) |
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