SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
MIRA3 multiple input files from same tech grassgirl Bioinformatics 6 11-10-2011 10:09 AM
IsoEM - input/output files Jane M RNA Sequencing 1 08-05-2011 07:48 AM
problem with gsnap sam output lindseyjane Bioinformatics 2 11-04-2010 05:27 AM
Problem with sam files created by bfast Fabrice ODEFREY Bioinformatics 2 09-22-2010 10:40 PM
MRNM problem for the .sam output file of tophat Gangcai Bioinformatics 4 08-13-2010 10:19 AM

Reply
 
Thread Tools
Old 11-22-2010, 08:53 AM   #1
mrfox
Senior Member
 
Location: USA

Join Date: Aug 2010
Posts: 103
Question cuffdiff0.9.2: output problem when input multiple SAM files

Hi all,
I wonder if any of you have run cuffdiff to compare >=3 samples. I did this with cuffdiff 0.9.2, the latest version. The command is:
./cuffdiff -p 10 -o <output dir> [reference gtf] sample1.sam sample2.sam sample3. sam
However, I did not get the *.diff files (i.e., 0_1*.diff) though I did get files such as gene_exp.diff, genes.fpkm_tracking etc.

Did I miss something?
Thank you all and happy thanks giving! :-)
mrfox is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:09 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO