Hi
I have single-end chip-seq reads mapped to hg19. I have called peaks and have a .bed output.
Is there a software that scans the intervals in the bed and, referencing the .bam alignment, outputs some statistics about the number of reads within each peak? For examples, how many reads contribute to each peak?
I have single-end chip-seq reads mapped to hg19. I have called peaks and have a .bed output.
Is there a software that scans the intervals in the bed and, referencing the .bam alignment, outputs some statistics about the number of reads within each peak? For examples, how many reads contribute to each peak?
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