Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Knowledge about SOAPdenovo-trans pbrand Bioinformatics 5 02-07-2017 09:25 PM
SOAPdenovo-trans without paired reads rexxi Bioinformatics 4 03-09-2015 11:14 AM
SOAPdenovo-Trans: Seg fault kenietz De novo discovery 5 05-31-2013 05:53 PM
SOAPdenovo-trans alternative splicing pbrand Bioinformatics 8 10-10-2012 01:15 AM
Comparing Soapdenovo and Soapdenovo-Trans Kate.W Bioinformatics 0 08-06-2012 03:04 PM

Thread Tools
Old 02-12-2014, 08:45 AM   #1
Senior Member
Location: Switzerland

Join Date: Aug 2008
Posts: 116
Talking Finding main transcripts from SOAPdenovo-trans results

Hi guys, do you know how I can get the main/best/longest transcripts for each locus in my SOAPdenovo-trans assemblies? I'm not interested in the alternative splicing isoforms. When I used the locusMaxOutput option -t 0, it gave me all the transcripts per locus. When I used locusMaxOutput option -t 1, it gave me maximum two transcripts per locus (locus_x_0 and locus_x_1). I'm currently using the first transcript from each locus (locus_x_0), however, I'm not sure if this is the main transcript.

Thanks for your help in advance!
Melissa is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:02 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO