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Old 08-28-2019, 02:15 AM   #1
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Location: Germany

Join Date: Aug 2019
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Default sub-sample mixed NCBI fasta file per taxon

I am trying to pull a set number (e.g. 4) of random sequences per genus from a fasta file containing reference sequences of multiple taxa downloaded from NCBI.
I have tried obitools, something like
obiselect -t my_taxo -c genus -n 4 all_seqs.fasta
which obviously doesn't work.
Can anyone point me to a tool/syntax that does that?
Any help would be greatly appreciated!
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