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Old 04-11-2009, 05:40 AM   #1
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Default PubMed: Methods for generating shotgun and mixed shotgun/paired-end libraries for the

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Related Articles Methods for generating shotgun and mixed shotgun/paired-end libraries for the 454 DNA sequencer.

Curr Protoc Hum Genet. 2009 Apr;Chapter 18:Unit18.1

Authors: Wiley G, Macmil S, Qu C, Wang P, Xing Y, White D, Li J, White JD, Domingo A, Roe BA

With the introduction of massively parallel, microminiature-based instrumentation for DNA sequencing, robust, reproducible, optimized methods are needed to prepare the target DNA for analysis using these high-throughput approaches because the cost per instrument run is orders of magnitude more than for typical Sanger dideoxynucleotide sequencing on fluorescence-based capillary systems. The methods provided by the manufacturer for genome sequencing using the 454/Roche GS-20 and GS-FLX instruments are robust. However, in an effort to streamline them for automation, we have incorporated several novel changes and deleted several extraneous steps. As a result of modifying these sample preparation protocols, the number of manual manipulations has also been minimized, and the overall yields have been improved for both shotgun and mixed shotgun/paired-end libraries. Curr. Protoc. Hum. Genet. 61:18.1.1-18.1.21. (c) 2009 by John Wiley & Sons, Inc.

PMID: 19360698 [PubMed - in process]



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