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Old 06-20-2012, 05:39 AM   #1
Nazneen Ali
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Location: Pakistan

Join Date: Jun 2012
Posts: 1
Default Phylogenetics Tool

Hi,
I am working on a project and I need to know which ever phylogenetics tool ( based on the bayesian inference) is most in use and considered best these days.
This is a list of phylogenetics tools i have found while searching on the web:

TOPALi
PAML
MrBayes
BEAST
BayesPhylogenies
BATWING
BAli-Phy

I need to know which of these tools is considered best among professionals.
Thankyou in advance
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Old 04-03-2013, 07:26 AM   #2
kalidaemon
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Location: Boston

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Default

Hi Nazeen
There's no "best" program or method for phylogenetic analysis. It all depends on your data-set, the questions you're asking, and your proficiency with different computer languages. There are many ways to construct phylogenetic trees including maximum likelihood, maximum parsimony, MCMC/Bayesian interference. The SEQwiki has a list of software tools: http://seqanswers.com/wiki/Software/list that might be a good place to start.
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