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Old 09-15-2009, 12:29 PM   #1
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Default Software to handle BACs

Hi, I'm working on maize genome sequencing using Solexa. Maize genome is not fully assembled, so all the sequences are in BACs instead of chromosomes. I wonder what software can handle BAC-coordinated sequences for RNA-seq analysis, such as SNP calling and CNV calculation. Thanks a lot.
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rna-seq; solexa; bac

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