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Old 12-01-2013, 11:58 AM   #1
bossy
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Location: sweden

Join Date: Nov 2013
Posts: 1
Default stampy install error

Hi,

I tried to install stampy in my Ubuntu system.
But when I use the $ make
The error shown like this:

make[1]: Entering directory `/home/b/bin/stampy-1.0.22'
make[2]: Entering directory `/home/b/bin/stampy-1.0.22'
cp -r build/python2.7/* .
g++ `python2.7-config --ldflags` -pthread -shared -Wl build/linux-x86_64-2.7-ucs4/pyx/maptools.o build/linux-x86_64-2.7-ucs4/c/maputils.o build/linux-x86_64-2.7-ucs4/c/alignutils.o build/linux-x86_64-2.7-ucs4/readalign.o build/linux-x86_64-2.7-ucs4/algebras.o build/linux-x86_64-2.7-ucs4/frontend.o -o maptools.so
g++: error: unrecognized command line option ‘-Wl’
make[2]: *** [buildall] Error 1
make[2]: Leaving directory `/home/b/bin/stampy-1.0.22'
make[1]: *** [build-stampy] Error 2
make[1]: Leaving directory `/home/b/bin/stampy-1.0.22'
make: *** [all] Error 2

Is anybody know how to fix this problem. Thx!
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Old 01-18-2014, 01:58 PM   #2
emalick
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Location: US

Join Date: Jan 2014
Posts: 1
Default

Any luck resolving this problem? I'm having a similar issue.
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Old 02-11-2014, 08:36 AM   #3
darked89
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Location: Barcelona, Spain

Join Date: Jun 2009
Posts: 36
Default

Quote:
Originally Posted by bossy View Post
Hi,

I tried to install stampy in my Ubuntu system.
But when I use the $ make
The error shown like this:

make[1]: Entering directory `/home/b/bin/stampy-1.0.22'
make[2]: Entering directory `/home/b/bin/stampy-1.0.22'
cp -r build/python2.7/* .
g++ `python2.7-config --ldflags` -pthread -shared -Wl build/linux-x86_64-2.7-ucs4/pyx/maptools.o build/linux-x86_64-2.7-ucs4/c/maputils.o build/linux-x86_64-2.7-ucs4/c/alignutils.o build/linux-x86_64-2.7-ucs4/readalign.o build/linux-x86_64-2.7-ucs4/algebras.o build/linux-x86_64-2.7-ucs4/frontend.o -o maptools.so
g++: error: unrecognized command line option ‘-Wl’
make[2]: *** [buildall] Error 1
make[2]: Leaving directory `/home/b/bin/stampy-1.0.22'
make[1]: *** [build-stampy] Error 2
make[1]: Leaving directory `/home/b/bin/stampy-1.0.22'
make: *** [all] Error 2

Is anybody know how to fix this problem. Thx!

Yes. Just run the last command without the -Wl
Like this:

g++ `python2.7-config --ldflags` -pthread -shared build/linux-x86_64-2.7-ucs4/pyx/maptools.o build/linux-x86_64-2.7-ucs4/c/maputils.o build/linux-x86_64-2.7-ucs4/c/alignutils.o build/linux-x86_64-2.7-ucs4/readalign.o build/linux-x86_64-2.7-ucs4/algebras.o build/linux-x86_64-2.7-ucs4/frontend.o -o maptools.so

This is an error with newer gcc, 4.8.1 in my case. And BTW, check the neweest version:
http://www.well.ox.ac.uk/%7Egerton/s....0.23r2059.tgz

Hope it helps.

Darek
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