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Analyzing mutational bias in single gene simon_seq Bioinformatics 2 04-09-2013 03:33 AM

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Old 02-12-2014, 03:05 AM   #1
mmmm
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Default mutational snps only

when all kinds of SNPs are called in bacterial genome- how could we get a list of the mutational SNPs only (excluding snps due to recommbination)?- how can we identify the snps that are because of recommbination?- is there a script for this?
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Old 02-12-2014, 05:13 AM   #2
TiborNagy
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I have never heard a script like this. I think only a wet lab experiment can answer to this question.
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Old 02-12-2014, 06:59 AM   #3
mmmm
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Default mutational snps

thanks but I am sure there is a way to differentiate between recommbinant snps and mutational snps- any thoughts please?
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Old 02-13-2014, 04:48 AM   #4
TiborNagy
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Maybe this can help:
http://seqanswers.com/forums/showthread.php?t=40855
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