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Old 09-05-2014, 04:23 AM   #1
fefe89
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Location: italy

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Default How to extract viral orf from metagenomic data

Hi

I'm trying to manage some metagenomic data.

I need to extract all the orf correlate to viral genes (such as related to capsid, tail and so on).

I've already made a blast against NCBI database but I can't screen all the orfs by myself.

I've also made a blast against PHAST database, but I got a lot of genes related to metabolism or other functions proper of bacteria (in fact the same orf blasted against NCBI gave me a bacterial orf).

Someone can help me?
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Old 09-05-2014, 04:43 AM   #2
GenoMax
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You could use BBSplit to bin your reads.
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