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Old 02-02-2016, 08:39 PM   #1
JazminO
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Location: Australia

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Default StringTie Output

Hello all,

I am an RNA-Seq newbie who is having some issues with the StringTie output. I am currently using StringTie on Galaxy with the -b option so that StringTie will output files appropriate for Ballgown (.ctab files). However, when I check the files created by StringTie they are in .tabular format. Has anyone else encountered this problem, and is there a way to convert from .tabular to .ctab? I've heard of Tablemaker, but it is apparently used on Cufflinks files ...

Help would be much appreciated
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Old 02-02-2016, 11:33 PM   #2
dpryan
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".ctab" is a tabular format. Just peek at the files inside Galaxy and make sure they look like what's described here: https://github.com/alyssafrazee/ball...ression-output

Edit: BTW, you'll find the Galaxy support site (https://biostar.usegalaxy.org/) useful for questions like this.

Last edited by dpryan; 02-02-2016 at 11:38 PM.
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Old 02-03-2016, 06:50 PM   #3
JazminO
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Thanks for your reply! I had a look inside the files and they were all fine. I think the problem was with the file name extension, but after changing that, Ballgown read the files.
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