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Old 01-19-2018, 05:36 AM   #1
echo manolis
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Location: Italy

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Question FastQC, v0.11.5, error: Too many tiles ...

Ubuntu

Hi,

I have FastQC, v0.11.5 and I want to evaluate an Illumina run (pairend). I have reads of 150bp and a average coverage near to 60X.

When I run FastQC after some time I have this kind of error:

"Too many tiles (>500) so giving up trying to do per-tile qualities since we're probably parsing the file wrongly"

I tried to increase the threads with "-t 10" but I still have the same error.

What I have to do to fix this error?

Best,
echo manolis
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Old 01-19-2018, 06:09 AM   #2
GenoMax
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If this is NovaSeq data then you should upgrade to the latest FastQC (v. 0.11.7).
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Old 01-19-2018, 10:44 PM   #3
echo manolis
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ok thanks. I will try and I will let you know!

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