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Old 11-26-2010, 02:00 AM   #1
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Default RNA-Seq: A survey of statistical software for analysing RNA-seq data.

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A survey of statistical software for analysing RNA-seq data.

Hum Genomics. 2010 Oct 1;5(1):56-60

Authors: Gao D, Kim J, Kim H, Phang TL, Selby H, Tan AC, Tong T

High-throughput RNA sequencing is rapidly emerging as a favourite method for gene expression studies. We review three software packages - edgeR, DEGseq and baySeq - from Bioconductor http://bioconductor.org for analysing RNA-sequencing data. We focus on three aspects: normalisation, statistical models and the testing employed on these methods. We also discuss the advantages and limitations of these software packages.

PMID: 21106489 [PubMed - in process]



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Old 11-27-2010, 12:06 PM   #2
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wow! Newsbot had a yummmy Turkey it seems.. so many posts :P
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Old 11-29-2010, 03:20 PM   #3
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Quote:
Originally Posted by bioinfosm View Post
wow! Newsbot had a yummmy Turkey it seems.. so many posts :P
no kidding! so many posts for 1 day
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Old 11-29-2010, 05:16 PM   #4
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Haha! It was in fact that all of his (its?) posts were approved instead of the usual weeding out that I do. The search terms I use pick up a lot of extraneous stuff that isn't relevant.
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Old 11-30-2010, 07:19 AM   #5
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Haha ok Anyhow, I did end up download several of the papers
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Old 12-01-2010, 11:34 AM   #6
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Has anybody found a copy of this article yet...?
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Old 12-01-2010, 01:49 PM   #7
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I haven't been able to download it from it's main site: http://henrystewart.metapress.com/ap...lts,1:121141,1 but maybe your institution has a subscription.

Greetings,
Leonardo
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Old 12-03-2010, 10:43 AM   #8
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I was also looking for a copy, but no luck yet..
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Old 12-03-2010, 06:16 PM   #9
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Who can get the paper? sent it to me.
Thank you
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Old 12-05-2010, 11:25 AM   #10
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The paper isn't posted yet- just listed in "forthcoming content" on the journal website.
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Old 12-06-2010, 01:55 AM   #11
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Oh, I will wait for it is in public accession!
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Old 12-20-2010, 01:20 AM   #12
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searched for the title:

http://www.math.hkbu.edu.hk/~tongt/p...nGenomics2.pdf
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Old 12-20-2010, 09:10 PM   #13
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Thank for schmima
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