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Old 06-08-2010, 11:40 AM   #1
jli525
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Location: Sanfran

Join Date: Jun 2010
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Default cuffcompare vs cuffdiff?

I understand what Cufflinks does, but not cuffcompare and cuffdiff. How does cuffcompare only pick out the major isoforms and disposes of the fake novel isoforms? and what does cuffdiff do?
Thanks
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