Howdy everyone,
We are building a small rocks cluster (4-5 nodes to start) and I am hoping to configure it to perform some denovo tools (abyss and trinity) but also to be able to run the tuxedo suite(bowtie, tophay, cufflinks). The question I have is there any way to deploy bowtie runs across machines (using something like SGE or PBS)? It seems like using myrna or crossbow would require making the cluster a hadoop cluster correct? Switching to Hadoop seems interchangeable and I'm not sure about having a hadoop cluster if we decide we want run other applications on it. Any advice folks have is muchly appreciated. Thanks!!
-Rich
We are building a small rocks cluster (4-5 nodes to start) and I am hoping to configure it to perform some denovo tools (abyss and trinity) but also to be able to run the tuxedo suite(bowtie, tophay, cufflinks). The question I have is there any way to deploy bowtie runs across machines (using something like SGE or PBS)? It seems like using myrna or crossbow would require making the cluster a hadoop cluster correct? Switching to Hadoop seems interchangeable and I'm not sure about having a hadoop cluster if we decide we want run other applications on it. Any advice folks have is muchly appreciated. Thanks!!
-Rich
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