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Old 04-09-2015, 06:50 AM   #1
Location: Missouri

Join Date: Jan 2013
Posts: 21
Default Reassign mapping quality in STAR / GATK/ Cufflinks compatibility

Hello all,

I'm reassigning mapping quality values produced by STAR from 255 to 60 (column 5 of the output) for GATK compatibility and I was wondering if this will have any effect on Cufflinks results?

Thank you for your time,
cbaudo is offline   Reply With Quote

cufflinks, gatk, mapq, rnaseq, star

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