Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Star with cufflinks Nino Bioinformatics 20 12-12-2016 10:06 AM
STAR + Cufflinks. Cufflinks hanging. BAM XS error? gogodidi Bioinformatics 3 12-20-2015 10:19 PM
GATK RNA-Seq pathway Split 'n' Trim- problems with .bai and .fai index compatibility gwilymh Bioinformatics 1 11-18-2014 12:33 AM
CuffLinks / CuffDiff GTF Compatibility Bio.X2Y Bioinformatics 2 08-17-2011 09:04 AM
What cut off does GATK snp calling use for mapping quality score? foxyg Bioinformatics 0 09-25-2010 12:19 PM

Thread Tools
Old 04-09-2015, 07:50 AM   #1
Location: Missouri

Join Date: Jan 2013
Posts: 21
Default Reassign mapping quality in STAR / GATK/ Cufflinks compatibility

Hello all,

I'm reassigning mapping quality values produced by STAR from 255 to 60 (column 5 of the output) for GATK compatibility and I was wondering if this will have any effect on Cufflinks results?

Thank you for your time,
cbaudo is offline   Reply With Quote

cufflinks, gatk, mapq, rnaseq, star

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:08 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO