Hello,
I noticed that last sample (last 3 columns) in mpileup format behave strangely in positions with low base quality (< 13). It looks like:
0
where it should be:
0 * *
Does anyone have similar issue? Is this a bug?
It confuses my downstream scripts, because there are fewer columns in those positions than expected.
I am using Version: 1.2 (using htslib 1.2.1)
I noticed that last sample (last 3 columns) in mpileup format behave strangely in positions with low base quality (< 13). It looks like:
0
where it should be:
0 * *
Does anyone have similar issue? Is this a bug?
It confuses my downstream scripts, because there are fewer columns in those positions than expected.
I am using Version: 1.2 (using htslib 1.2.1)
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