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Thread | Thread Starter | Forum | Replies | Last Post |
SAM format: single vs multiple hits | darked89 | Bioinformatics | 1 | 07-17-2012 12:29 PM |
BWA Multiple Hits | EthoStrain | Bioinformatics | 4 | 02-20-2012 08:02 AM |
Multiple hits from BLAT? | thsuk1 | Bioinformatics | 2 | 09-21-2010 01:13 AM |
BWA sampe multiple hits question | sahar | Bioinformatics | 0 | 08-03-2010 02:20 PM |
maq multiple hits information? | baohua100 | Bioinformatics | 15 | 08-13-2009 02:31 PM |
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#1 |
Junior Member
Location: New Zealand Join Date: Jan 2008
Posts: 8
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Hi,
I have been using MAQ for a while and like how it fits into MapView for mapping areas of low coverage (i.e no consensus possible). ![]() I have no problems in converting maq map files to txt files for viewing. That is very straightforward. But there is a problem in looking at the multiple hit output when the -H switch is used with maq map. I am unable to convert the format to txt if I save it as a map. It is encoded somehow and will not uncompress with anything I have (linux and windows tools tried). maq mapview tells me I have to convert the file with mapass2maq but this hangs without converting anything. Does anyone know how to convert these files to txt. Cheers Lesley |
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#2 |
Junior Member
Location: Beijing Join Date: Jul 2009
Posts: 5
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the file produced by using the '-H' option is gzipped
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Tags |
maq, maq map |
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