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  • Unexpected end-of-file ERR with PHYLIP

    I was testing Phylip protdist using the default setting. My input file is:

    7 9
    4950 CTREGLTAS
    4376 CARWETGTA
    4752 CARELTGTT
    5657 CARSGNGST
    4348 CAR-GVSSA
    1548 CARSDLGPA
    4451 CARSGLGSA

    I kept getting:
    ERROR: Unexpected end-of-file.

    I tried proml or promlk and got the same error. What am I missing here, pls?

  • #2
    The Phylip developed solved the puzzle - the names are too short.

    Comment


    • #3
      In fact, manual is not exhaustive...

      Originally posted by graceqy View Post

      I kept getting:
      ERROR: Unexpected end-of-file.

      I tried proml or promlk and got the same error. What am I missing here, pls?
      I solved this by extending names to required length of 10 symbols and adding TAB in the end of each title.

      Regards,

      Ivan

      Comment


      • #4
        Hello
        Could you be so kind as to write the corrected input file from the above example ?
        I tried to run protdist on the following:

        6 39
        HermitL_A;FDILAFWHAHEERYPRLSKLALRILAIPASSASCERAFR
        Homer_Bt;;FNLMEWWQSNQSKYPHLSKFALQIHAIPASSAAAERSFS
        Hermes_Md;FKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFS
        Hobo_Dm;;;FEVIEWWKNNANLYPQLSKLALKLLSIPASSAELKECFP
        Ac9_Zm;;;;FDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFS
        IVS2L_m45;TKELSLFELHGKLSRNLDMIFDALKSIKPTSTDSERVFS

        I got the ERROR: Unexpected end-of-file.
        And I do not catch what is wrong here...
        Thanks ahead

        Comment

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