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Old 03-01-2015, 06:50 AM   #1
Location: USA

Join Date: Aug 2014
Posts: 33
Default Trinity: contigs vs reads

After obtaining the contigs, how can I know how many reads map to each contig?.. I want to have an idea of the abundance of the reads for each contig

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Old 03-01-2015, 10:23 AM   #2
Devon Ryan
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480

Map the reads against the contigs. This is a pretty common step actually.
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