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Old 10-06-2009, 06:30 PM   #1
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Default advantages and disadvantages of adapter barcoding?

What are the advantages and disadvantages of barcoding adapters for multiplexing versus barcoding the PCR primers? Is adapter barcoding just another way to do multiplex?
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Old 10-07-2009, 02:54 AM   #2
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"Although indexing has the obvious benefit of multiplexing samples within a run, DNA indexing offers two key additional advantages: direct measure of base-by-base error rate and reduction of arrayto-array or day-to-day variability."

--by David WCraig etc. al., Identification of genetic variants using bar-coded multiplexed sequencing, Nature Methods, Vol. 5, No. 10. (14 September 2008), pp. 887-893.
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