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Old 12-12-2012, 11:17 AM   #1
Location: Gainesville

Join Date: Dec 2012
Posts: 28
Default Comparing trees

I am trying to find a program that compares trees using a reference. Does anybody knows if Bioperl has this module?
joxcargator73 is offline   Reply With Quote
Old 12-12-2012, 01:25 PM   #2
Location: Flagstaff, AZ

Join Date: Feb 2010
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If you want Robinson-Foulds values, try:

hashrf (
treedist (http://evolution.genetics.washington.../treedist.html)
phangorn (

And a nice tool to visualize differences between trees:

Don't know about bioperl.
themerlin is offline   Reply With Quote

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