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Old 12-12-2012, 11:17 AM   #1
joxcargator73
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Location: Gainesville

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Default Comparing trees

I am trying to find a program that compares trees using a reference. Does anybody knows if Bioperl has this module?
Thanks
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Old 12-12-2012, 01:25 PM   #2
themerlin
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Default

If you want Robinson-Foulds values, try:

hashrf (https://code.google.com/p/hashrf/)
treedist (http://evolution.genetics.washington.../treedist.html)
phangorn (http://cran.r-project.org/web/packag...orn/index.html)

And a nice tool to visualize differences between trees:
http://sco.h-its.org/exelixis/countTreeComparer.php

Don't know about bioperl.
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