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Old 04-16-2013, 01:28 AM   #1
sirmark
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Default gene name and position list in a chr* of a genome

Hi all!

How can I obtain a list of gene on a chromosome ?

I need know the set of genes in chrX on hg18,
I would gene name, start:end position.

thanks for support!
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Old 04-16-2013, 01:37 AM   #2
mastal
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Default gene name and position list in a chr* of a genome

try BioMart,

http://www.biomart.org/
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Old 04-16-2013, 01:39 AM   #3
sirmark
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ok, I solve here:
http://genome.ucsc.edu/cgi-bin/hgTables

but if I want start:end position of each gene,
what do I must select from the following ?
strand: + or - for strand
txStart: Transcription start position
txEnd: Transcription end position
cdsStart: Coding region start
cdsEnd: Coding region end
exonStarts: Exon start positions
exonEnds: Exon end positions
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Old 04-16-2013, 01:49 AM   #4
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ok I solve from my link!
thanks !
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