Go Back   SEQanswers > Sequencing Technologies/Companies > Ion Torrent

Similar Threads
Thread Thread Starter Forum Replies Last Post
Metavelvet-Evaluating an assembly vanillasky Bioinformatics 0 04-08-2014 01:09 PM
Validating and Evaluating the Quality of an NGS pipeline Nilaksha Bioinformatics 2 03-12-2014 08:24 PM
How do I go about evaluating my assembly? prs321 Bioinformatics 3 01-23-2014 09:02 PM
Evaluating overdispersion in CummeRbund gwilymh Bioinformatics 0 11-05-2013 01:39 PM
benchmarking tools for evaluating methods for differential exon usage alittleboy Bioinformatics 2 07-12-2013 09:02 AM

Thread Tools
Old 05-18-2015, 07:54 AM   #1
Junior Member
Location: Moscow

Join Date: Apr 2012
Posts: 7
Default Evaluating errors in assemblies

I'm looking for approximate statistics of genome assembly errors (SNP, indel) which are introduced due to errors in raw reads.
Most errors are eliminated when coverage is high enough, but some (i.e. homopolymer errors) occur non-randomly and, as a consequence, introduce errors to assembly.

Maybe someone has come across such information (papers, presentations)?
I think it`s a simple but important question which can be answered (approximately) by comparing assemblies made from reads from different sequencing platforms.

Thanks in advance!

Aleksander Manolov
paraslonic is offline   Reply With Quote

assembly error rate

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 06:38 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO