Hello,
I am trying to map solid reads to a reference file using bfast, and during the post-processing step, when I try to get the output in sam format, bfast begins processing the reads and immediately prints the error message:
AlignedReadConvert.c:705: AlignedReadConvertPrintAlignedEntryToSAM: Assertion `strlen(qual) == strlen(read)' failed.
Abort
I checked the length of the qual line in the fastq file that I used and it was equal to the length of the sequence line. I also tried post processing with the output in baf format, and then converting to .sam format using bafconvert, but that resulted in the same error during the conversion step.
Any help in this matter would be greatly appreciated.
Thanks,
etk1220
I am trying to map solid reads to a reference file using bfast, and during the post-processing step, when I try to get the output in sam format, bfast begins processing the reads and immediately prints the error message:
AlignedReadConvert.c:705: AlignedReadConvertPrintAlignedEntryToSAM: Assertion `strlen(qual) == strlen(read)' failed.
Abort
I checked the length of the qual line in the fastq file that I used and it was equal to the length of the sequence line. I also tried post processing with the output in baf format, and then converting to .sam format using bafconvert, but that resulted in the same error during the conversion step.
Any help in this matter would be greatly appreciated.
Thanks,
etk1220
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