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02-13-2013, 06:26 AM
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Junior Member
Location: United Kingdom Join Date: Feb 2013
Posts: 9
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GSNAP Error message "splicesites file has a negative distance"
Hello,
I am working with an RNASeq project and am trying to use GSNAP for the same. Splicesites are created with a few warning messages using gff3_splicesites from GMAP package. However, when I use that file further for alignment then, I get an error message "splicesites file has a negative distance XXXX in entry Y ...exiting" I was wondering if anyone has faced this problem before and does anyone know a fix to this? Thanks in advance. |
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