Small RNA Analysis Tool problems

nedoluzhko · 10-04-2010, 04:39 AM

Hello to all!

I have problems with 'Small RNA Analysis Tool'. I created concatenate genome (using corona), downloaded mirRNA.fasta and mirRNA.gff from database, configured - config.txt... however after begin program I read this info:

Settings:

reads file = /mss2/export/Artem/Human/A9/RNA_seq_A9_F3.csfasta

configuration file = /mss2/export/Artem/Human/config_file_example.txt

package directory = /mss2/export/SeqAnalSoft/Solid_RNA_Pipeline/0.5.0/bin

output_directory = /mss2/export/Artem/Human/output/

reference genome file /mss2/export/Genomes/fastas/human/chromosomes/human_valid.fasta DOES NOT EXIST, Please check the path...

I checked path many times and permissions... All is normal.

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10-04-2010, 04:39 AM	#1
nedoluzhko Member Location: Russia, Moscow Join Date: Aug 2009 Posts: 22	Small RNA Analysis Tool problems Hello to all! I have problems with 'Small RNA Analysis Tool'. I created concatenate genome (using corona), downloaded mirRNA.fasta and mirRNA.gff from database, configured - config.txt... however after begin program I read this info: Settings: reads file = /mss2/export/Artem/Human/A9/RNA_seq_A9_F3.csfasta configuration file = /mss2/export/Artem/Human/config_file_example.txt package directory = /mss2/export/SeqAnalSoft/Solid_RNA_Pipeline/0.5.0/bin output_directory = /mss2/export/Artem/Human/output/ reference genome file /mss2/export/Genomes/fastas/human/chromosomes/human_valid.fasta DOES NOT EXIST, Please check the path... I checked path many times and permissions... All is normal.