Hi all...could you suggest me a way to combine annotations coming from different files and related to the same subject (e.g. the same genomic coordinate) ? I was thinking about Annovar (tool to annotate nucleotide variants, indels, etc.) which produces a lot of files...and usually I use Excel to combine all of this annotations in one final document containing all the informations.
This method works, but it takes me a lot of time....
Thank you!
Another question: how can I annotate a BED file containing a list of genomic coordinates, with corrisponding Gene Symbols ? I tried using the UCSC genome browser (tables section), but I was able to annotate just with ucsc gene names, and not with normal names (like Hugo symbol names). BEDTools can do it ? thanks!
This method works, but it takes me a lot of time....
Thank you!
Another question: how can I annotate a BED file containing a list of genomic coordinates, with corrisponding Gene Symbols ? I tried using the UCSC genome browser (tables section), but I was able to annotate just with ucsc gene names, and not with normal names (like Hugo symbol names). BEDTools can do it ? thanks!
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