IDP is an gene Isoform Detection and Prediction tool from Second Generation Sequencing and PacBio sequencing.
It offers very reliable gene isoform identification with high sensitivity. This release includes both bug fixes and new features.
Now version 0.1.6 has been released. It offers some important additional features such as the option to use either GMAP or BLAT for long read alignment. It has also been released under the very open Apache 2.0 license.
You may find IDP here:
If you have any questions please contact us.
Release Notes:
1.) Bug fix: Now allowing computation of detected_exp_len file when not provided.
2.) estimator_choice being added to the config file and accepting
either MAP or MLE (MAP is default if the parameter is not set or
absent).
3.) Software is licensed under Apache 2.0
4.) GMAP can optionally be used as well as BLAT, however when using
GMAP, a path to the index must be specified in the config file
5.) BLAT and SeqMap are no longer bundled, paths to aligner
executables must be specified if they are not installed in the path
under their default names.
It offers very reliable gene isoform identification with high sensitivity. This release includes both bug fixes and new features.
Now version 0.1.6 has been released. It offers some important additional features such as the option to use either GMAP or BLAT for long read alignment. It has also been released under the very open Apache 2.0 license.
You may find IDP here:
If you have any questions please contact us.
Release Notes:
1.) Bug fix: Now allowing computation of detected_exp_len file when not provided.
2.) estimator_choice being added to the config file and accepting
either MAP or MLE (MAP is default if the parameter is not set or
absent).
3.) Software is licensed under Apache 2.0
4.) GMAP can optionally be used as well as BLAT, however when using
GMAP, a path to the index must be specified in the config file
5.) BLAT and SeqMap are no longer bundled, paths to aligner
executables must be specified if they are not installed in the path
under their default names.
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