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  • Convert vcf to bed based on PS field

    Hello,
    I want to convert the VCF file with phase information into a phase block bed format.
    So if this is the file:

    #CHROM POS REF ALT GT PS
    Chr_1 1223 A G 1|0 1223
    Chr_1 1245 A G 1|0 1223
    Chr_1 1297 A G 1|0 1223
    Chr_1 1450 A G 1|0 1450
    Chr_1 1498 A G 1|0 1450

    I wish to obtain a file like:

    #CHROM START END
    Chr_1 1223 1297
    Chr_1 1450 1498

    Please help!

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