I assume this can be done, because the binaries that are available on the samtools website (for 0.1.7 and earlier) don't need a Cygwin environment to run?
I can compile everything fine within Cygwin, but attempting to run the following with the latest source code (0.1.11) fails.
Am I even using the right command?
I ultimately need a samtools.exe that can be given to people that don't have Cygwin.
Thanks
I can compile everything fine within Cygwin, but attempting to run the following with the latest source code (0.1.11) fails.
Code:
$ make -f Makefile.mingw gcc.exe -c -g -Wall -O2 -mno-cygwin -D_CURSES_LIB=2 -D_USE_KNETFILE -Iwin32 bam_tview.c -o bam_tview.o gcc.exe -c -g -Wall -O2 -mno-cygwin -D_CURSES_LIB=2 -D_USE_KNETFILE -Iwin32 bam_maqcns.c -o bam_maqcns.o bam_maqcns.c: In function `ks_shuffle_uint32_t': bam_maqcns.c:8: warning: implicit declaration of function `drand48' gcc.exe -c -g -Wall -O2 -mno-cygwin -D_CURSES_LIB=2 -D_USE_KNETFILE -Iwin32 bam_plcmd.c -o bam_plcmd.o bam_plcmd.c: In function `pileup_func': bam_plcmd.c:247: warning: implicit declaration of function `drand48' In file included from bam2bcf.h:6, from bam_plcmd.c:526: bcftools/bcf.h:35:18: bgzf.h: No such file or directory make: *** [bam_plcmd.o] Error 1
I ultimately need a samtools.exe that can be given to people that don't have Cygwin.
Thanks
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