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  • Collect Metrics on known and unknown assemblies

    Hi everybody,

    I have a question to ask about a trivial problem I can't solve.

    I am looking for collecting several informations about known assemblies available from ensEMBL

    For example, I'd like to know for a genome assembly, the number of genes, exons, introns, and the average length of UTRs

    Is there a tool that can suit me or do I have to do something in particular?

    Also, I need for a temporary assembly to know the numbe rof scaffolds and the average length of the contigs: do I need to make a script for it or there's an easier way to find that?

    Thansk a lot!

    Daniele

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