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Old 04-06-2013, 01:56 PM   #1
Junior Member
Location: USA

Join Date: Jul 2012
Posts: 4
Default variant position - mpileup

Hi all,

I want to find the mean position of variant within reads. I am using samtools mpileup|bcftools for variant call.

Does anyone know how to accomplish this.

Note: I saw this question posted sometime back with no replies. I am sorry for
re-posting , but I was wondering by now if anyone have got any idea.

Thanks a lot for any of your comments

asebastian is offline   Reply With Quote

bioinformatics, mpileup, samtools, variant calling

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