SEQanswers

Go Back   SEQanswers > Applications Forums > De novo discovery



Similar Threads
Thread Thread Starter Forum Replies Last Post
De Novo Short Read Assembler? doxologist De novo discovery 18 05-21-2010 05:55 AM
De novo assembly of human genomes with massively parallel short read sequencing dan Literature Watch 0 12-21-2009 04:40 AM
PubMed: De novo assembly of human genomes with massively parallel short read sequenci Newsbot! Literature Watch 0 12-19-2009 02:13 AM
De novo fragment assembly with short mate-paired reads, Does the read length matter? strob Literature Watch 3 10-23-2009 01:36 PM
PubMed: Velvet: Algorithms for De Novo Short Read Assembly Using De Bruijn Graphs. Newsbot! Literature Watch 0 03-20-2008 05:24 AM

Reply
 
Thread Tools
Old 06-23-2009, 06:42 PM   #1
Patrick
Member
 
Location: Malaysia

Join Date: Mar 2009
Posts: 27
Default De novo short read assembly? Which assembler is the best?

Hi,
I just learn the short read assembly. I know got few assembler program such as velvet, mira and edena, etc are available now.
Got anybody got experience using those three assembly for short read assembly before? My question is listed as below:
Which assembler is the best among all?
What is the main difference between each of the assembler?

Thanks for all of your guide and suggestion
Patrick is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:14 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO