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Old 02-19-2013, 07:24 AM   #1
sinclaircooper
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Location: Edinburgh

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Default Simulate reads from circular ref

Hi,

Does anybody have a method for simulating reads from a reference? I would like the read simulator to be able to treat the reference as circular.

I have been using this script http://socwiki.wordpress.com/2011/05...ngss-sequence/ but it has been returning libraries with odd insert sizes (not sure how to fix it). I have also tried using one of my own python scripts but it's not good enough for the job.

Appreciate any input!

Thanks
S
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Old 02-19-2013, 08:21 AM   #2
turnersd
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http://sourceforge.net/projects/biogrinder/
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Old 02-20-2013, 10:03 AM   #3
sinclaircooper
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Hi, that looks great but I can't see an option to treat the input sequences as circular. Am I missing something? If so could you point me in the right direction?


Thanks
S
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circular, illumina, mitochondrial, simulation, trypanosome

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