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Taxonomic assignment discrepancies between SILVA and GenBank databases pmb0010 Metagenomics 1 05-12-2013 09:53 AM

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Old 06-11-2013, 05:36 AM   #1
naman
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Location: Germany

Join Date: Sep 2012
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Default Silva database

Dear SEQanswer,

I have list of accession numbers of sequences from one of the paper and I want to download those particular list from SILVA database. I tried but what I could do is search individually and download but not all together. If any one has done this please let me know also.
One thing I know is possible to download full database and grep my list but then I have no idea how to download reference file in silva. I found it bit complicated.

Thanks in advance
Cheers,

Last edited by naman; 06-11-2013 at 05:39 AM.
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Old 06-13-2013, 07:03 AM   #2
jmeppley
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Location: Cambridge

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You can get the FASTA files from here:
http://www.arb-silva.de/no_cache/dow...e_111/Exports/

cheers.
-j
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