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Hi,
Our lab recently installed a local version of Galaxy on a mid-2012 Mac Pro computer. We can access the Galaxy server and sign in as an administrator. Today we tried creating a Data Library, adding a dataset to it, and uploading a directory of files. We followed this Galaxy documentation to setup this feature:
- Admin > Data Library > Add datasets > Upload directory of files
- file format was set to auto-detect
- and we chose the option to link to files instead of copying them
Galaxy confirmed that the files were successfully uploaded. However, in the data library, under the Message column, is a message in red saying "Job error (click name for more info)". Clicking on one of the uploaded files displays a page with this information:
Questions:
1. Should we be concerned about this error?
2. If so, what is the right way to fix it?
3. If not, how do we remove the red error message next to each file: "Job error (click name for more info)" ?
Thank you
Our lab recently installed a local version of Galaxy on a mid-2012 Mac Pro computer. We can access the Galaxy server and sign in as an administrator. Today we tried creating a Data Library, adding a dataset to it, and uploading a directory of files. We followed this Galaxy documentation to setup this feature:
- Admin > Data Library > Add datasets > Upload directory of files
- file format was set to auto-detect
- and we chose the option to link to files instead of copying them
Galaxy confirmed that the files were successfully uploaded. However, in the data library, under the Message column, is a message in red saying "Job error (click name for more info)". Clicking on one of the uploaded files displays a page with this information:
Date uploaded: 2013-06-28
File size: 7.5 GB
Data type: auto
Build: sacCer2
Miscellaneous information:
Traceback (most recent call last): File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 386, in __main__() File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 357, in __main__ output_paths =
Job Standard Error
Traceback (most recent call last):
File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 386, in
__main__()
File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 357, in __main__
output_paths = parse_outputs( sys.argv[4:] )
File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 64, in parse_outputs
id, files_path, path = arg.split( ':', 2 )
ValueError: need more than 1 value to unpack
error
Database/Build: sacCer2
Number of data lines: None
Disk file: /Volumes/G-SPEED Q/data/Person 2012 project/DCP2 mef.fastq
File size: 7.5 GB
Data type: auto
Build: sacCer2
Miscellaneous information:
Traceback (most recent call last): File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 386, in __main__() File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 357, in __main__ output_paths =
Job Standard Error
Traceback (most recent call last):
File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 386, in
__main__()
File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 357, in __main__
output_paths = parse_outputs( sys.argv[4:] )
File "/Users/administrator/galaxy-dist/tools/data_source/upload.py", line 64, in parse_outputs
id, files_path, path = arg.split( ':', 2 )
ValueError: need more than 1 value to unpack
error
Database/Build: sacCer2
Number of data lines: None
Disk file: /Volumes/G-SPEED Q/data/Person 2012 project/DCP2 mef.fastq
Questions:
1. Should we be concerned about this error?
2. If so, what is the right way to fix it?
3. If not, how do we remove the red error message next to each file: "Job error (click name for more info)" ?
Thank you
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