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Old 08-18-2010, 02:31 AM   #1
Location: Uppsala

Join Date: Feb 2010
Posts: 27
Default Errors using consed

I have got a 454 data, and I have performed its denovo assembly. I am trying to perform gap closure using consed. When i run the consed and try to load the ace file, it loads the file but with the error: could not open phd file. ../phd dir/
And secondly when i try to open the chromatogram of a particular read, it gives me error: Unable to find chromatogram file ../chromat_dir/sff:F33GYHM02.sff:"read name".
I have checked the installation and there isn't any problem with the installation, its working well with the test data and I have also checked my data on some other system where consed was running well. I dont know how to stop getting this message.
Any one please help.
Mona is offline   Reply With Quote
Old 09-22-2010, 01:43 AM   #2
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Location: Cambridge

Join Date: Sep 2010
Posts: 115
Default Please use latest consed.

Which version of the consed you are using?

Please use version 19. This problem happens on the consed versions 16 and before.
Markiyan is offline   Reply With Quote

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