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Old 11-29-2010, 06:33 AM   #1
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Location: Ireland

Join Date: Nov 2010
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Default Meaning of '0' quality score in MAQ

If a read has a zero quality score in MAQ does that mean:

a) The read aligns to multiple positions
b) The read aligns to nowhere

I think it's either one or both of these but I'd hope someone can clear it up for me?
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