Hi All,
I am using Bowtie 1 (0.12.7) to map ChIP-seq reads to mouse genome.
I am trying to only report the uniquely mapped reads with two or less mismatches.
The options I used is "-v 2 -m 1".
Are these options correct?
Many thanks!
Best,
Jerry
I am using Bowtie 1 (0.12.7) to map ChIP-seq reads to mouse genome.
I am trying to only report the uniquely mapped reads with two or less mismatches.
The options I used is "-v 2 -m 1".
Are these options correct?
Many thanks!
Best,
Jerry