I have a bed file from PET data in this format
chr17 58754953 58754971 pair1 23 -
chr17 58755650 58755672 pair1 25 +
chr13 93209287 93209313 pair2 37 +
chr13 93209438 93209457 pair2 20 -
etc.
I want to plot it in IGV so each pair is represented as it is in the attached figure where each read is represented as a box with a line connecting the two members of each pair. What format do I need to convert my data into? Or how can I view it this way.
chr17 58754953 58754971 pair1 23 -
chr17 58755650 58755672 pair1 25 +
chr13 93209287 93209313 pair2 37 +
chr13 93209438 93209457 pair2 20 -
etc.
I want to plot it in IGV so each pair is represented as it is in the attached figure where each read is represented as a box with a line connecting the two members of each pair. What format do I need to convert my data into? Or how can I view it this way.
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