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Old 09-29-2011, 03:39 PM   #1
fancy
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Question bowtie programming

Hello!
I want to use bowtie to do alignment for several hundreds times. Is there anybody who knows any way to call bowtie program so that I won't type hundreds times. Thanks a lot!
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Old 09-29-2011, 04:23 PM   #2
nilshomer
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Shell scripting is an easy way to go, or group them all into one fastq.
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