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Old 12-18-2011, 09:46 PM   #1
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Location: Ann Arbor

Join Date: Oct 2011
Posts: 6
Default how to do annotation on Breakdancer result

I've got some breakdancer results on SV. But the format is not in VCF. Beside, the outcome of breakdancer is an estimate of structural variation. It couldn't gave exact breakpoints, nor the sequence of insertion. I couldn't change it into VCF formats, or other input formats of ANNOVAR. Does anyone has such experience? Thank you very much!
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annotation, breakdancer, structural variants

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