Go Back   SEQanswers > Applications Forums > Metagenomics

Similar Threads
Thread Thread Starter Forum Replies Last Post
PubMed: Assessing the Consequences of Denoising Marker-Based Metagenomic Data. Newsbot! Literature Watch 0 03-29-2013 05:00 AM
Converting 454 reads to illumina reads empyrean Bioinformatics 3 08-28-2012 09:49 AM
duplicate reads in Illumina short, single end reads of RNAseq data inbarpl Bioinformatics 4 05-22-2012 09:36 AM
Illumina filtered reads vs unfiltered reads rnaeye Bioinformatics 3 05-09-2012 06:55 AM
PubMed: Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance Newsbot! Literature Watch 0 09-02-2010 03:00 AM

Thread Tools
Old 05-15-2013, 04:56 AM   #1
Junior Member
Location: UK

Join Date: Mar 2013
Posts: 2
Default Denoising Illumina reads

Does anyone have any advice on denoising Illumina reads (specifically 16s reads from a HiSeq)? I've had a look in the literature and most of the denoising algorithms available seem to be aimed at 454 sequencing (and not really applicable to Illumina since they work on flowgram files). The only real possibility seems to be Rosen et al (2012). I would be very interested to hear about anyone's experience using this or any other approach for denoising Illumina data.
bsp022 is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 09:34 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO