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Old 06-26-2010, 08:32 AM   #1
Location: Boston

Join Date: Apr 2010
Posts: 14
Default question about bwa

I tried to run bwa as the following:
/usr/local/bin/bwa index -p /cluster2/aimin/data_from_nature_publication/Reference/hg19 /cluster2/aimin/data_from_nature_publication/Reference/hg19.fa

However I got this error:

[bwa_index] Pack FASTA... 55.51 sec
[bwa_index] Reverse the packed sequence... 14.65 sec
[bwa_index] Construct BWT for the packed sequence...
/var/spool/torque/mom_priv/jobs/ line 17: 15634 Segmentation fault /usr/local/bin/bwa index -p /cluster2/aimin/data_from_nature_publication/Reference/hg19 /cluster2/aimin/data_from_nature_publication/Reference/hg19.fa

Any help will be great!

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Old 06-26-2010, 03:00 PM   #2
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Location: Boston

Join Date: Feb 2008
Posts: 693

bwa index -a bwtsw
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question about bwa

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