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Old 10-22-2010, 04:14 AM   #1
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Location: stockholm

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Default Does Cufflinks support single-end and paired end data together ?

Has anybody tried Cufflinks after merging single-end and paired-end data ?
I am guessing the connectivity between exons will be a lot better this way.
However, the --library-type parameter seems to allow either single or paired.

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Old 10-22-2010, 07:26 AM   #2
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The default library-type will handle this mixture just fine.
adarob is offline   Reply With Quote

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